Package noduledistances.imagej

Class Skeletonize

java.lang.Object

noduledistances.imagej.Skeletonize

public class Skeletonize
extends Object

Class using Ling Dong's skeletonization algorithm. Used for finding a graph representation of the root system.

Author:

Brandin Farris

Constructor Summary

Constructors

Constructor	Description
Skeletonize()

Method Summary

Modifier and Type	Method	Description
static ij.ImagePlus	scaleImage(ij.ImagePlus originalImage, double scaleFactor)	Scales the image according to the scale factor.
static ArrayList<ArrayList<int[]>>	skeletonize(ij.ImagePlus imp)	Uses Ling Dong's skeletonization algorithm to find the skeleton of the root system.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Skeletonize

public Skeletonize()

Method Details

skeletonize

public static ArrayList<ArrayList<int[]>> skeletonize(ij.ImagePlus imp)

Uses Ling Dong's skeletonization algorithm to find the skeleton of the root system.

Parameters:

imp - : binary image with the root system segmented.

Returns:

the skeleton of the root system.

scaleImage

public static ij.ImagePlus scaleImage(ij.ImagePlus originalImage,
 double scaleFactor)

Scales the image according to the scale factor.

Parameters:

originalImage - : image to be scaled.

scaleFactor - : factor to scale the image by.

Returns:

a scaled version of the originla image.