Package noduledistances.imagej

Class GraphOverlay

java.lang.Object

noduledistances.imagej.GraphOverlay

public class GraphOverlay
extends Object

This class is used to hold the image plus object that has the skeletonized root system on top of the image of the root.

Author:

Brandin Farris

Field Summary

Fields

Modifier and Type	Field	Description
ij.ImagePlus	overlayedGraph

Constructor Summary

Constructors

Constructor	Description
GraphOverlay()

Method Summary

Modifier and Type	Method	Description
void	overlayGraph(RootGraph graph, ij.process.ColorProcessor cp)	overlays the graph and nodules onto the user-provided root system image.
void	showGraph()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

overlayedGraph

public ij.ImagePlus overlayedGraph

Constructor Details

GraphOverlay

public GraphOverlay()

Method Details

showGraph

public void showGraph()

overlayGraph

public void overlayGraph(RootGraph graph,
 ij.process.ColorProcessor cp)

overlays the graph and nodules onto the user-provided root system image. Labels each nodule by the nodule naming system noduleNumber_noduleSubnumber

Parameters:

graph - : object that contains all information about the skeltonized root system.

cp - : ColorProcessor object of the root system image provided by the user.